Name
|
Primer sequence
|
Region
|
Notes
|
Universal to Phytophthora
species
Oom-Btub-up415 F
Oom(Ph)-Btub-lo954 R
Oom(Ph)-Btub-up901 F
Oom-Btub-lo1401 R
|
5′-CGCATCAACGTGTACTACAA-3′
5′-GCACACCAGGTGGTTC-3′
5′-TACGACATTTGCTTCCG-3′
5′-CGCTTGAACATCTCCTGG-3′
|
β-tubulin
β-tubulin
|
≈539 bp
≈500 bp
|
Universal to Phytophthora
species
UN-UP18S42 F
OOM-LO5.8S47 R
OOM-UP5.8S-55 F
UN-LO28S22 R
|
5′-CGTAACAAGGTTTCCGTAGGTGAAC-3′
5′-ATTACGTATCGCAGTTCGCAG-3′
5′-TGCGATACGTAATGCGAATT-3′
5′-GTTTCTTTTCCTCCGCTTATTGATATG-3′
|
ITS
ITS
|
≈350 bp
≈650 bp
|
Universal to Phytophthora
species
Phy_elicitor1 F
Phy_elicitor2 R
|
5′-GCCCTCGTCGGCTCCAC-3′
5′-GTGAACACGTTGAGTACCAGGC-3′
|
Elicitin
|
≈300 bp
|
Specific to P.
ramorum
Phy_ram_482U_LNA F
Phy_ram_653L_LNA R
ITSPrim622U F
ITSPrimer755L R
Prameli 102U F
Prameli259L R
|
5′-GGCGCTGTACGACATTTG-3′
5′-ACGCGGGAACGGAATCAA-3′
5′-AATGACTGGTGAACCGTAGCTG-3
5′-CGAAGCCGCCAACACAAG-3′
5′-TTCAACCAGTGCGCGACC-3′
5′-GGCACAGTCAGCTCGCAGTC-3′
|
β-tubulin
ITS
Elicitin
|
LNA modified
171 bp
133 bp
157 bp
|
Beacon4. Beta tub F
|
[6~FAM]CGGGCTCGGACATAGCGGCGCACACCAGCCCG[Dabcyl]
|
β-tubulin
|
|
TaqMan probes
TaqMan581L R
TaqManITSGB651L R
Taq195eli R
|
[6~FAM]CGTGGTGATGCCGGACATAGCG[BHQ1~Q]
[6~FAM]AACACCGTCGATTCAAAAGCCAAGC[BHQ1~Q]
[6~FAM]CCGTGGACGCGCACATGAGCGAGTAC[BHQ1~Q
|
β-tubulin
ITS
Elicitin
|
|